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To list keys in java keystore.
/usr/java/jre1.6.0_03/bin/keytool --list --keystore /usr/java/jre1.6.0_03/lib/security/cacerts
Import key in java keystore.
openssl x509 -outform der -in certificate.pem -out certificate.der keytool -import -alias your-alias -keystore cacerts -file certificate.der